Rummel, P. S.; Rasmussen, M. R.; Saghai, A.; Merl, T.; Hallin, S.; Mueller, C. W.; Koren, K.

Plant roots modify all major controls of denitrification in soils, particularly the availability of the main substrates (NO3- and Corg), soil moisture, soil O2 content, and root-associated microbial communities, and thus play an important role in N2O formation. Direct in-situ measurements of N2O concentrations in the rhizosphere are lacking, yet crucial to understanding how rhizosphere denitrification contributes to overall N2O emissions from soil. We equipped rhizoboxes with O2-sensitive planar optodes to simultaneously monitor root growth and rhizosphere/soil O2 concentrations. We measured soil surface N2O fluxes and linked them to root growth, soil moisture, and root/soil O2 concentrations. Based on root growth and O2 concentrations, we identified regions of interest (ROI) and sampled small soil volumes, which were analyzed for C, N, abundance of microbial denitrifiers (nirK, nirS) and N2O reducers (nosZI, nosZII), and soil N2O concentrations. Plant roots determined depth gradients of nutrients and denitrification gene abundances in the soil of the rhizoboxes with higher resource availability (NO3-, DOC) and lower soil moisture in the upper soil layers, which also had higher abundances of total bacteria, nirK and nosZII. We anticipate that these uppermost soil layers largely contributed to N2O formation. For the first time we were able to show high in-situ N2O concentrations with distinct depth profiles around roots, and O2 and N availability controlling N2O production at the process scale.