Tar, L.; Saray, S.; Mohacsi, M.; Freund, T. F.; Kali, S.

Anatomically and biophysically detailed models of neurons have been widely used to study information processing in these cells. Most studies focused on understanding specific phenomena, while more general models that aim to capture various cellular processes simultaneously remain rare even though such models are required to predict neuronal behavior under more complex, natural conditions. In this study, we aimed to develop a detailed, data-driven, general-purpose biophysical model of hippocampal CA1 pyramidal neurons. We leveraged extensive morphological, biophysical and physiological data available for this cell type, and established a systematic workflow for model construction and validation that relies on our recently developed software tools. The model is based on a high-quality morphological reconstruction and includes a diverse curated set of ion channel models. After incorporating the available constraints on the distribution of ion channels, the remaining free parameters were optimized using the Neuroptimus tool to fit a variety of electrophysiological features extracted from somatic whole-cell recordings. Validation using HippoUnit confirmed the models ability to replicate key electrophysiological features, including somatic voltage responses to current input, the attenuation of synaptic potentials and backpropagating action potentials, and nonlinear synaptic integration in oblique dendrites. Our model also included active dendritic spines, modeled either explicitly or by merging their biophysical mechanisms into those of the parent dendrite. We found that many aspects of neuronal behavior were unaffected by the level of detail in modeling spines, but modeling nonlinear synaptic integration accurately required the explicit modeling of spines. Our data-driven model of CA1 pyramidal cells matching diverse experimental constraints is a general tool for the investigation of the activity and plasticity of these cells and can also be a reliable component of detailed models of the hippocampal network. Our systematic approach to building and validating general-purpose models should apply to other cell types as well.