Deconvolving the spatiotemporal chromatin landscape through the cell cycle

Deconvolving the spatiotemporal chromatin land...

Bioinformatics
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librarian
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Adaptive 2.5D base-pairing subgraph search detects RNA small-molecule binding sites

Adaptive 2.5D base-pairing subgraph search det...

Bioinformatics
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librarian
2 views
Coordinate- and Sequence-Based Features for a new Combined Annotation-Dependent Depletion Framework of Structural Variants (CADD-SV v2.0)

Coordinate- and Sequence-Based Features for a ...

Bioinformatics
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librarian
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BBBP_Atlas: Unified Interpretable Modeling of Blood Brain Barrier Permeability across Small Molecules and Peptides

BBBP_Atlas: Unified Interpretable Modeling of ...

Bioinformatics
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librarian
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A deep-learning-informed prior and Bayesian model for differential AP-MS interactome analysis

A deep-learning-informed prior and Bayesian mo...

Bioinformatics
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librarian
2 views
scJET: Full-gene Space Single-cell Expression Generation with Patch-based Transformer Modeling

scJET: Full-gene Space Single-cell Expression ...

Bioinformatics
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librarian
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Mutational bias shapes protein evolution across RNA viruses

Mutational bias shapes protein evolution acros...

Bioinformatics
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librarian
3 views
SPECTER-Based Semantic Triage of Biomedical Literature for Systematic Reviews in Mutational Signature Analysis

SPECTER-Based Semantic Triage of Biomedical Li...

Bioinformatics
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Ronie Caligagan Bituin
2 views
Metabolic Rewiring in Triple-Negative Breast Cancer: Systems Analysis of TCGA-BRCA Transcriptome Reveals Prognostic Hub Genes

Metabolic Rewiring in Triple-Negative Breast C...

Bioinformatics
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librarian
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Learning the spatial cell-cell communication network to decode multi-channel signaling and predict network-hub vulnerabilities with MOSANIC

Learning the spatial cell-cell communication n...

Bioinformatics
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librarian
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Assessing tensor decomposition quality of immune profiling data from a dictionary learning perspective

Assessing tensor decomposition quality of immu...

Bioinformatics
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librarian
3 views
Generative AI Models Reveal Dynamic Views of Aging (DyViA) Phenotypes in Healthy Individuals

Generative AI Models Reveal Dynamic Views of A...

Bioinformatics
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librarian
3 views
IgGM2: An All-Atom Foundation Model for Adaptive Immune Receptor Design

IgGM2: An All-Atom Foundation Model for Adapti...

Bioinformatics
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librarian
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Gene-specific exponent-corrected normalization for library size in bulk RNA-seq

Gene-specific exponent-corrected normalization...

Bioinformatics
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librarian
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A five-dimensional functional state space for fingerprinting disease transcriptomes

A five-dimensional functional state space for ...

Bioinformatics
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librarian
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Coding agents author interpretable single-cell embedding models from the literature

Coding agents author interpretable single-cell...

Bioinformatics
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librarian
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Rectangle: robust and scalable multiscale deconvolution informed by single-cell RNA sequencing data

Rectangle: robust and scalable multiscale deco...

Bioinformatics
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Francesca Finotello
4 views
LeafRank: A phylodynamic framework for inferring relative fitness from single-cell phylogenies in chromosomally unstable tumors

LeafRank: A phylodynamic framework for inferri...

Bioinformatics
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Ruping Sun
3 views
Mind the Alignment Gap: A Spatial Transcriptomics Benchmark for Scientific Coding Agents

Mind the Alignment Gap: A Spatial Transcriptom...

Bioinformatics
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librarian
3 views
EZSolver: Template-free prediction of polar enzymatic mechanisms via bidirectional flow matching and search

EZSolver: Template-free prediction of polar en...

Bioinformatics
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librarian
3 views
Gene Program Negotiation Defines Cellular Identity in Single-Cell Transcriptomes

Gene Program Negotiation Defines Cellular Iden...

Bioinformatics
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Ji-Yong Sung
3 views
Thematic Shifts in Early-High-Impact Cancer Genomics and Diagnostics Research: A Bibliometric and Semantic Analysis

Thematic Shifts in Early-High-Impact Cancer Ge...

Bioinformatics
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Zheng Su
4 views
BertST: BERT-based Spatial Domain Identification in Patient Data

BertST: BERT-based Spatial Domain Identificati...

Bioinformatics
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Gospel Nnadi
3 views
qg: Configuration-Driven, Multi-Vendor Acquisition Queue Generation with Reproducible Run-Order and QC Control for Mass Spectrometry

qg: Configuration-Driven, Multi-Vendor Acquisi...

Bioinformatics
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librarian
3 views
Beyond Bisulfite Sequencing: Resolving 5-hmC with Nanopore Sequencing Unmasks the True-5mC Methylation Entropy Landscape

Beyond Bisulfite Sequencing: Resolving 5-hmC w...

Bioinformatics
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librarian
3 views
Scanning transcriptomes for nonlinear, domain-level similarities using hmSEEKR

Scanning transcriptomes for nonlinear, domain-...

Bioinformatics
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librarian
4 views
Immunoinformatics-Guided Design and In Silico Evaluation of a Multi-Epitope Vaccine Against Influenza A H10N5 and H3N2 Strains Based on Hemagglutinin and Neuraminidase Proteins

Immunoinformatics-Guided Design and In Silico ...

Bioinformatics
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Muhammad Shabbir
14 views
PredHLM: quantitative and interpretable prediction of metabolic half-life in human liver microsomes

PredHLM: quantitative and interpretable predic...

Bioinformatics
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librarian
5 views
FEATMAP: Targeted Correction of Acquisition Signatures Harmonizes Medical Foundation Model Embeddings and Enables Robust Task Generalization

FEATMAP: Targeted Correction of Acquisition Si...

Bioinformatics
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Ernst Lengyel
5 views
Region-Level Design and Analysis of CRISPR Perturbation Screens with FRACTEL

Region-Level Design and Analysis of CRISPR Per...

Bioinformatics
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librarian
10 views
Integrated Framework for Probing Multimodal Protein Foundation Models with Structure-Functional Interpretability Analysis in Detection of Allosteric Binding Sites

Integrated Framework for Probing Multimodal Pr...

Bioinformatics
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librarian
8 views
MetaboCensoR: A Shiny Application for Data Filtering in Untargeted LC-MS Metabolomics to Enhance Interpretability

MetaboCensoR: A Shiny Application for Data Fil...

Bioinformatics
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Ivan Plyushchenko
8 views