Bioinformatics

Viral non-coding RNA structure annotation and API-based data retrieval with Rfam and R2DT

Viral non-coding RNA structure annotation and ...

Bioinformatics
Avatar
Pedro Madrigal
0 views
GlyComboCLI enables command line-based FAIR workflows for glycan composition assignment in mass spectrometry data

GlyComboCLI enables command line-based FAIR wo...

Bioinformatics
Avatar
librarian
3 views
Bayesian-Steered Structure Prediction of Mechanical Biomolecules Using Twisted Diffusion

Bayesian-Steered Structure Prediction of Mecha...

Bioinformatics
Avatar
librarian
3 views
A Comprehensive Benchmarking of Spatial Deconvolution andDomain Detection Methods across Diverse Tissues and SpatialTranscriptomic Technologies

A Comprehensive Benchmarking of Spatial Deconv...

Bioinformatics
Avatar
librarian
4 views
An improved generic schema for high fidelity data linkage and sample tracing across complex multi-assay medical entomology studies

An improved generic schema for high fidelity d...

Bioinformatics
Avatar
librarian
4 views
Phylogenomic coupling of F1 chemosensory and archaellum systems across archaea and monoderm bacteria

Phylogenomic coupling of F1 chemosensory and a...

Bioinformatics
Avatar
librarian
4 views
Systematic Regional Bias is Widespread in ChIP-seq

Systematic Regional Bias is Widespread in ChIP-seq

Bioinformatics
Avatar
librarian
1 view
BiLSTM-Powered Bilinear Attention for Protein-Ligand Prediction

BiLSTM-Powered Bilinear Attention for Protein-...

Bioinformatics
Avatar
Feng-Yin Li
4 views
xNNPCD identifies regulators of programmed cell death by integrating perturbation transcriptomes with cancer dependency profiles

xNNPCD identifies regulators of programmed cel...

Bioinformatics
Avatar
librarian
4 views
Preferential IsomiR Enrichment in Extracellular Vesicles Improves Identification of Their Cellular Origins

Preferential IsomiR Enrichment in Extracellula...

Bioinformatics
Avatar
Haiyan Hu
3 views
Cell-Level Virtual Screening

Cell-Level Virtual Screening

Bioinformatics
Avatar
librarian
3 views
Redesign selective protein binders using contrastive decoding

Redesign selective protein binders using contr...

Bioinformatics
Avatar
librarian
4 views
Integrated RNA-seq analysis identifies ABC transporters mediating taxane export in Taxus species

Integrated RNA-seq analysis identifies ABC tra...

Bioinformatics
Avatar
Codruta Ignea
5 views
De novo protein discovery in non-model organisms

De novo protein discovery in non-model organisms

Bioinformatics
Avatar
Asif Ali
5 views
cran2crux: automatically create CRUX ports for R-packages

cran2crux: automatically create CRUX ports for...

Bioinformatics
Avatar
librarian
4 views
HAIRpred2: Human Host-Specific Prediction of Antibody-Interacting Residues Using Hybrid Physicochemical and Structural Features

HAIRpred2: Human Host-Specific Prediction of A...

Bioinformatics
Avatar
Naman Mehta
2 views
Transferable spatial omics deconvolution with SpaRank

Transferable spatial omics deconvolution with ...

Bioinformatics
Avatar
librarian
3 views
Metagenomics-enabled proteomics reveals how AMF and PSB co-inoculation reshapes tomato rhizosphere dynamics across growth stages

Metagenomics-enabled proteomics reveals how AM...

Bioinformatics
Avatar
Jenny Kao-Kniffin
4 views
An assessment of normalization and differential expression methods for miRNA-seq analysis using a realistic benchmark dataset

An assessment of normalization and differentia...

Bioinformatics
Avatar
Ernesto Aparicio-Puerta
9 views
The elusive resistome: a global comparison reveals large discrepancies among detection pipelines

The elusive resistome: a global comparison rev...

Bioinformatics
Avatar
librarian
7 views
ClaroAI-Bench: Evaluating Agentic Scientific Reproducibility on Real Biomedical Papers

ClaroAI-Bench: Evaluating Agentic Scientific R...

Bioinformatics
Avatar
librarian
7 views
ProCAST: A Bioinformatics Suite for Mass Spectrometry-Based Protein Corona Proteomics Analysis

ProCAST: A Bioinformatics Suite for Mass Spect...

Bioinformatics
Avatar
Simone Douglas-Green
8 views
Detecting and quantifying overparametrization in RNA language models with REDIAL

Detecting and quantifying overparametrization ...

Bioinformatics
Avatar
librarian
7 views
Unified sampling framework and experimental benchmarking of sequence- and structure-based protein models

Unified sampling framework and experimental be...

Bioinformatics
Avatar
librarian
4 views
MuseDrift: Navigating Protein Evolutionary Manifolds with Conditional Discrete Diffusion

MuseDrift: Navigating Protein Evolutionary Man...

Bioinformatics
Avatar
librarian
9 views
Unlocking Open-Access Genomic and Transcriptomic Data: The First Bioinformatic Exploitation of Tunisian Durum Wheat Landraces Chili and Mahmoudi, Pioneering Data-Driven Research in North Africa

Unlocking Open-Access Genomic and Transcriptom...

Bioinformatics
Avatar
librarian
7 views
PARiS: Probabilistic Assignment and Repartitioning of isomiR Sequences: A data-driven method for denoising isomiR read count data

PARiS: Probabilistic Assignment and Repartitio...

Bioinformatics
Avatar
librarian
7 views
On the applicability domain of HADDOCK3 for protein-aptamer docking: documented failure modes from a 5x7 cross-target screening matrix and a 1676 aa receptor case study (P01031)

On the applicability domain of HADDOCK3 for pr...

Bioinformatics
Avatar
librarian
5 views
A Conditional Random Field approach for de novo reconstruction of bacterial haplotypes from a de Bruijn graph representation

A Conditional Random Field approach for de nov...

Bioinformatics
Avatar
librarian
9 views
AI-derived Protein Structures Validation: AlphaFold2 Models in the Twilight Zone

AI-derived Protein Structures Validation: Alph...

Bioinformatics
Avatar
librarian
6 views
Temporal-deviation-driven community detection uncovers early-warning signals for critical transitions in complex diseases

Temporal-deviation-driven community detection ...

Bioinformatics
Avatar
Bin Hu
11 views
Dual-view Guided Context-aware Network for Automated Bone Lesion Segmentation and Quantification in Whole-body SPECT

Dual-view Guided Context-aware Network for Aut...

Bioinformatics
Avatar
librarian
10 views
Load more