Bioinformatics

Development of Deep-Learning Models that Predict Quantitative Protein-Ligand Interac-tions in Glycobiology as a part of a Capstone Course

Development of Deep-Learning Models that Predi...

Bioinformatics
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librarian
3 views
Beyond statistical significance: ranking transcription factor binding motifs by effect size

Beyond statistical significance: ranking trans...

Bioinformatics
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librarian
4 views
EnrichViz: An Interactive R Shiny Application for Visualization of Pathway Enrichment Results from Omics Data

EnrichViz: An Interactive R Shiny Application ...

Bioinformatics
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Rolando Garcia-Milian
15 views
Multi-Scale Machine Learning for Antibody-Antigen Binding Affinity Prediction Using Deep Mutational Scanning and Structural Features

Multi-Scale Machine Learning for Antibody-Anti...

Bioinformatics
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Santhosh Sivasubramani
7 views
Early Tracheal and Salivary miRNAs in Extremely Preterm Infants Predict BPD-related Pulmonary Hypertension

Early Tracheal and Salivary miRNAs in Extremel...

Bioinformatics
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librarian
8 views
Complex-valued representations of time-series gene expression profiles for network analysis

Complex-valued representations of time-series ...

Bioinformatics
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Jianqiang Sun
12 views
Expanding the GUSome: Structure-guided identification and characterization of gut microbial β-glucuronidases

Expanding the GUSome: Structure-guided identif...

Bioinformatics
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Subhash Bihani
22 views
Geometric Deep Learning Reveals Ligandable and Cryptic RNA Binding Small Molecule Pockets (SMARTPocket)

Geometric Deep Learning Reveals Ligandable and...

Bioinformatics
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librarian
47 views
SteerAF: Distogram-based Steering of AlphaFold2 toward Alternative Conformations

SteerAF: Distogram-based Steering of AlphaFold...

Bioinformatics
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librarian
43 views
OmniPath Metabo: chemical structures, interactions and mechanisms to study the metabolome

OmniPath Metabo: chemical structures, interact...

Bioinformatics
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librarian
39 views
Structure Bioinformatics of Eight Human ATP Synthase Fo Subunits and Their AlphaFold3-Predicted Water-Soluble QTY Analogs

Structure Bioinformatics of Eight Human ATP Sy...

Bioinformatics
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librarian
38 views
Structure-Based Immunoinformatics Design of a CTB-Adjuvanted Multi-Epitope Mucosal Vaccine Against Helicobacter pylori

Structure-Based Immunoinformatics Design of a ...

Bioinformatics
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Razieh Veisi
32 views
Predicting optimal growth temperatures of bacteria using learned structural information from a single protein

Predicting optimal growth temperatures of bact...

Bioinformatics
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Michael Hoffert
26 views
MorphoStat: A Statistics-Aware Pipeline for Morphological Profiling Analysis

MorphoStat: A Statistics-Aware Pipeline for Mo...

Bioinformatics
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librarian
28 views
Looking beyond stereotyped neuron structures reveals links between beading and morphological rearrangements in aging phenotypes.

Looking beyond stereotyped neuron structures r...

Bioinformatics
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Adriana San Miguel
28 views
Accounting for allelic diversity and multicopy gene detection improves the accuracy of antibiotic resistance genotypic determination

Accounting for allelic diversity and multicopy...

Bioinformatics
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Francesc Coll
26 views
Integrating Histology with Spatial Molecular Programs Using a Multimodal Foundation Model

Integrating Histology with Spatial Molecular P...

Bioinformatics
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Zongxu Zhang
60 views
Distinct fibrotic, epithelial and immune transcriptomic programs in phenotypes of chronic lung allograft dysfunction

Distinct fibrotic, epithelial and immune trans...

Bioinformatics
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craig-thorburn
67 views
CANCAN: high-resolution copy number and mutation heterogeneity analysis of DNA sequence data for clinical applications

CANCAN: high-resolution copy number and mutati...

Bioinformatics
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librarian
101 views
ToxCastLite: A portable semantic evidence graph linking in vitro bioactivity, in vivo toxicity, and exposure-use context

ToxCastLite: A portable semantic evidence grap...

Bioinformatics
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librarian
111 views
PocketBagger: Generalizable pocket druggability prediction via positive-unlabeled learning

PocketBagger: Generalizable pocket druggabilit...

Bioinformatics
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librarian
103 views
Multi-Scale Tri-Modal Histology Dataset Integrating Tumor Morphology, Immune Patterns, and Clinical Outcomes

Multi-Scale Tri-Modal Histology Dataset Integr...

Bioinformatics
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librarian
121 views
HESTIA: Scalable Multimodal Integration of Histology and High-Resolution Spatial Transcriptomics for Robust Spatial Domain Identification

HESTIA: Scalable Multimodal Integration of His...

Bioinformatics
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librarian
87 views
Interpretable Predictive Modeling for Medical Data Using Boolean Rule-aware Regression

Interpretable Predictive Modeling for Medical ...

Bioinformatics
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librarian
94 views
Elab2ARC: A Browser-Based Workspace for Converting Free-Text Protocols into rich FAIR digital objects

Elab2ARC: A Browser-Based Workspace for Conver...

Bioinformatics
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Sabrina Zander
108 views
A unified benchmark of synthetic data generation for clinical transcriptomic cancer cohorts

A unified benchmark of synthetic data generati...

Bioinformatics
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Christophe BATTAIL
96 views
Identifying Treatment Related Signatures In Glioblastoma Using KaleidoCell

Identifying Treatment Related Signatures In Gl...

Bioinformatics
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Jean Radig
104 views
Biological foundation models illuminate annotation blind spots in evolutionarily divergent genomes

Biological foundation models illuminate annota...

Bioinformatics
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librarian
92 views
TransXplorer: An automated translational discovery platform for RNA-seq data

TransXplorer: An automated translational disco...

Bioinformatics
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Varinder Madhav Verma
112 views
The human gut virome is a non-redundant and clinically informative component of the microbiome

The human gut virome is a non-redundant and cl...

Bioinformatics
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librarian
86 views
A modular Bayesian framework for inferring transmission networks from polyclonal infections, with application to Plasmodium falciparum

A modular Bayesian framework for inferring tra...

Bioinformatics
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librarian
98 views
Pan-Viral Conformational Landscapes of Frameshifting Elements Reveal Length-Dependent Plasticity and Antisense-Driven Structural Reprogramming

Pan-Viral Conformational Landscapes of Framesh...

Bioinformatics
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librarian
94 views
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