Bioinformatics

Learning the spatial cell-cell communication network to decode multi-channel signaling and predict network-hub vulnerabilities with MOSANIC

Learning the spatial cell-cell communication n...

Bioinformatics
Avatar
librarian
1 view
Assessing tensor decomposition quality of immune profiling data from a dictionary learning perspective

Assessing tensor decomposition quality of immu...

Bioinformatics
Avatar
librarian
1 view
Generative AI Models Reveal Dynamic Views of Aging (DyViA) Phenotypes in Healthy Individuals

Generative AI Models Reveal Dynamic Views of A...

Bioinformatics
Avatar
librarian
1 view
IgGM2: An All-Atom Foundation Model for Adaptive Immune Receptor Design

IgGM2: An All-Atom Foundation Model for Adapti...

Bioinformatics
Avatar
librarian
2 views
Gene-specific exponent-corrected normalization for library size in bulk RNA-seq

Gene-specific exponent-corrected normalization...

Bioinformatics
Avatar
librarian
2 views
A five-dimensional functional state space for fingerprinting disease transcriptomes

A five-dimensional functional state space for ...

Bioinformatics
Avatar
librarian
2 views
Coding agents author interpretable single-cell embedding models from the literature

Coding agents author interpretable single-cell...

Bioinformatics
Avatar
librarian
2 views
Rectangle: robust and scalable multiscale deconvolution informed by single-cell RNA sequencing data

Rectangle: robust and scalable multiscale deco...

Bioinformatics
Avatar
Francesca Finotello
2 views
LeafRank: A phylodynamic framework for inferring relative fitness from single-cell phylogenies in chromosomally unstable tumors

LeafRank: A phylodynamic framework for inferri...

Bioinformatics
Avatar
Ruping Sun
2 views
Mind the Alignment Gap: A Spatial Transcriptomics Benchmark for Scientific Coding Agents

Mind the Alignment Gap: A Spatial Transcriptom...

Bioinformatics
Avatar
librarian
2 views
EZSolver: Template-free prediction of polar enzymatic mechanisms via bidirectional flow matching and search

EZSolver: Template-free prediction of polar en...

Bioinformatics
Avatar
librarian
2 views
Gene Program Negotiation Defines Cellular Identity in Single-Cell Transcriptomes

Gene Program Negotiation Defines Cellular Iden...

Bioinformatics
Avatar
Ji-Yong Sung
2 views
Thematic Shifts in Early-High-Impact Cancer Genomics and Diagnostics Research: A Bibliometric and Semantic Analysis

Thematic Shifts in Early-High-Impact Cancer Ge...

Bioinformatics
Avatar
Zheng Su
2 views
BertST: BERT-based Spatial Domain Identification in Patient Data

BertST: BERT-based Spatial Domain Identificati...

Bioinformatics
Avatar
Gospel Nnadi
2 views
qg: Configuration-Driven, Multi-Vendor Acquisition Queue Generation with Reproducible Run-Order and QC Control for Mass Spectrometry

qg: Configuration-Driven, Multi-Vendor Acquisi...

Bioinformatics
Avatar
librarian
2 views
Beyond Bisulfite Sequencing: Resolving 5-hmC with Nanopore Sequencing Unmasks the True-5mC Methylation Entropy Landscape

Beyond Bisulfite Sequencing: Resolving 5-hmC w...

Bioinformatics
Avatar
librarian
2 views
Scanning transcriptomes for nonlinear, domain-level similarities using hmSEEKR

Scanning transcriptomes for nonlinear, domain-...

Bioinformatics
Avatar
librarian
3 views
Immunoinformatics-Guided Design and In Silico Evaluation of a Multi-Epitope Vaccine Against Influenza A H10N5 and H3N2 Strains Based on Hemagglutinin and Neuraminidase Proteins

Immunoinformatics-Guided Design and In Silico ...

Bioinformatics
Avatar
Muhammad Shabbir
13 views
PredHLM: quantitative and interpretable prediction of metabolic half-life in human liver microsomes

PredHLM: quantitative and interpretable predic...

Bioinformatics
Avatar
librarian
4 views
FEATMAP: Targeted Correction of Acquisition Signatures Harmonizes Medical Foundation Model Embeddings and Enables Robust Task Generalization

FEATMAP: Targeted Correction of Acquisition Si...

Bioinformatics
Avatar
Ernst Lengyel
4 views
Region-Level Design and Analysis of CRISPR Perturbation Screens with FRACTEL

Region-Level Design and Analysis of CRISPR Per...

Bioinformatics
Avatar
librarian
5 views
Integrated Framework for Probing Multimodal Protein Foundation Models with Structure-Functional Interpretability Analysis in Detection of Allosteric Binding Sites

Integrated Framework for Probing Multimodal Pr...

Bioinformatics
Avatar
librarian
5 views
MetaboCensoR: A Shiny Application for Data Filtering in Untargeted LC-MS Metabolomics to Enhance Interpretability

MetaboCensoR: A Shiny Application for Data Fil...

Bioinformatics
Avatar
Ivan Plyushchenko
5 views
BRAID: RT-PCR-calibrated conformal intervals for splicing ΔPSI

BRAID: RT-PCR-calibrated conformal intervals f...

Bioinformatics
Avatar
librarian
6 views
UVfinder: a tool to extract bryophyte sex-linked gene copies from the GoFlag408 probe set

UVfinder: a tool to extract bryophyte sex-link...

Bioinformatics
Avatar
librarian
6 views
ORBIT: Annotation-Aware Empirical Enrichment and Semantic Reranking for Interpretable Functional-Class Recovery

ORBIT: Annotation-Aware Empirical Enrichment a...

Bioinformatics
Avatar
librarian
8 views
Determinants of Blood Group Antigen Expression and Prediction of Phenotypes by Machine Learning

Determinants of Blood Group Antigen Expression...

Bioinformatics
Avatar
Anne-Cathérine Kranz
8 views
Molecular Clock Dating of Ancient Environmental DNA Reveals Damage Beyond Deamination

Molecular Clock Dating of Ancient Environmenta...

Bioinformatics
Avatar
librarian
8 views
DELPHAI predicts heterogeneous perturbation responses with learned cell fitness and gene-space retrieval

DELPHAI predicts heterogeneous perturbation re...

Bioinformatics
Avatar
librarian
10 views
A control-validated pan-proteome deep-learning pipeline nominates GPR35 as a candidate target of the orphan bacterial metabolite ligiamycin A

A control-validated pan-proteome deep-learning...

Bioinformatics
Avatar
James Martin II
10 views
OrthoGLMM: Phylogenetic Association Testing for Gene Content and Trait Evolution

OrthoGLMM: Phylogenetic Association Testing fo...

Bioinformatics
Avatar
librarian
8 views
Tissue tearing degrades optimal-transport and diffeomorphic registration of spatial transcriptomics beyond displacement magnitude: a multi-seed deformation benchmark and a supervised graph cross-attention proof-of-concept.

Tissue tearing degrades optimal-transport and ...

Bioinformatics
Avatar
Rushil Maniar
15 views
Load more