Bioinformatics

PhytoFam: A Nextflow Pipeline for Genome-Wide Analysis of Plant Gene Families

PhytoFam: A Nextflow Pipeline for Genome-Wide ...

Bioinformatics
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librarian
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A transparent multicriteria and fuzzy classification approach for genome-based probiotic candidate prioritisation

A transparent multicriteria and fuzzy classifi...

Bioinformatics
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Mohamed Amine Gomri
1 view
Integrated Bioinformatics Analysis of PALB2 Reveals Expression Patterns, Molecular Interactions, and Prognostic Significance in Breast Cancer

Integrated Bioinformatics Analysis of PALB2 Re...

Bioinformatics
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Arifa Jahan Bithi
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pHaseMD4AI: Phase-Space Dynamics Dataset with Chemical and pH Perturbations for Physically and Kinetically Consistent Biomolecular AI

pHaseMD4AI: Phase-Space Dynamics Dataset with ...

Bioinformatics
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Yandong Huang
1 view
An openly licensed benchmark and per-gene calibration map for missense pathogenicity predictors on activating cancer drivers

An openly licensed benchmark and per-gene cali...

Bioinformatics
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Sung-Gwon Lee
2 views
Contamination of widely used databases compromises rRNA based taxonomic assignment of metagenomes and metatranscriptomes

Contamination of widely used databases comprom...

Bioinformatics
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Alastair Grant
4 views
A Disease-Agnostic Nasal Microbiome Wellness Index for Standardized Assessment of Upper-Airway Respiratory Health

A Disease-Agnostic Nasal Microbiome Wellness I...

Bioinformatics
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Jaeyun Sung
4 views
MGM2 as a Unified Foundation Model for Microbiome World Exploration

MGM2 as a Unified Foundation Model for Microbi...

Bioinformatics
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librarian
2 views
Deep interpretable learning of sample representations for characterizing disease states in single-cell transcriptomics

Deep interpretable learning of sample represen...

Bioinformatics
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Manolis Kellis
5 views
MagicLamp: a web server and software toolkit for targeted gene annotation of microbial functions

MagicLamp: a web server and software toolkit f...

Bioinformatics
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A.I. Garber
5 views
fastCDS: proteome-scale mapping of protein domains to genomic coordinates

fastCDS: proteome-scale mapping of protein dom...

Bioinformatics
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L. Soto-Ugaldi
7 views
FastEBM: Fast, Scalable, and Uncertainty-Aware Event-Based Disease Progression Modeling

FastEBM: Fast, Scalable, and Uncertainty-Aware...

Bioinformatics
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Shayan Javid
3 views
Integrating single-cell and bulk transcriptomic perturbation resources reveals complementary therapeutic spaces for drug repurposing

Integrating single-cell and bulk transcriptomi...

Bioinformatics
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librarian
5 views
Learning Minimal Gene Programs for Disease-Aligned Representations

Learning Minimal Gene Programs for Disease-Ali...

Bioinformatics
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Adithya Madduri
5 views
scLEMBAS: Context-Aware Modeling of Signaling Pathway Activity at Single-Cell Resolution

scLEMBAS: Context-Aware Modeling of Signaling ...

Bioinformatics
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Douglas Lauffenburger
4 views
Hobrac: a reference-guided workflow for genome comparison and synteny visualization

Hobrac: a reference-guided workflow for genome...

Bioinformatics
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Jean-Marc Aury
4 views
A Standardized Methodology for FAIRness Assessment and Multi-Dimensional Scoring in Agrosystem Research Data Infrastructures

A Standardized Methodology for FAIRness Assess...

Bioinformatics
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librarian
5 views
Tangerine: A Python framework for dynamic gene regulation analysis from transcriptomic time series

Tangerine: A Python framework for dynamic gene...

Bioinformatics
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Tanmayee Narendra
4 views
BioPhasor: Decoding Cellular State Tensors from Multi-Omics Phasor Dynamics for Quantum Ready Systems Biology

BioPhasor: Decoding Cellular State Tensors fro...

Bioinformatics
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Dibakar Sigdel
5 views
IntraTalker - Modelling Intracellular Signalling in1 Cellular Crosstalk

IntraTalker - Modelling Intracellular Signalli...

Bioinformatics
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Ivan Costa
4 views
TrioNsight: Building a meta-predictor to evaluate the clinical impact of TrioN-like Dbl-homology domain variants

TrioNsight: Building a meta-predictor to evalu...

Bioinformatics
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Alperen Taciroğlu
6 views
IOBRpy enables agentic multi-omics decoding of anti-tumor immunity

IOBRpy enables agentic multi-omics decoding of...

Bioinformatics
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librarian
4 views
AI4Life Open Calls and Public Challenges: why, how, and what we have learned.

AI4Life Open Calls and Public Challenges: why,...

Bioinformatics
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librarian
5 views
Integrative structure determination of a human mitochondrial contact site and cristae organizing system (MICOS) sub-assembly

Integrative structure determination of a human...

Bioinformatics
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librarian
6 views
De Novo Design of Protein Switches with Diffusion-Based Ensemble Sampling

De Novo Design of Protein Switches with Diffus...

Bioinformatics
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librarian
6 views
The topology of transmembrane protein-protein interaction interfaces is encoded in their physicochemical features

The topology of transmembrane protein-protein ...

Bioinformatics
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Evandro Ferrada
4 views
CSOA: A Novel Single-Cell Gene Set Enrichment Analysis Method with Comprehensive Benchmarking

CSOA: A Novel Single-Cell Gene Set Enrichment ...

Bioinformatics
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Xueli Xu
4 views
Evolutionary divergence of LRRK2 interaction domains contributes to human- and mouse-specific protein interaction networks

Evolutionary divergence of LRRK2 interaction d...

Bioinformatics
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librarian
5 views
Binary node clustering via contrastive learning for haplotype phasing in de novo genome assembly

Binary node clustering via contrastive learnin...

Bioinformatics
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librarian
7 views
seqsizzle: decoding complex barcode and adapter architectures in long-read sequencing data

seqsizzle: decoding complex barcode and adapte...

Bioinformatics
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Changqing Wang
10 views
SPgen: Proteome-wide Spatial Proteomics generation using multi-modality foundation models

SPgen: Proteome-wide Spatial Proteomics genera...

Bioinformatics
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librarian
5 views
Representative vs. Load-bearing Layers: A Dissociation in Genomic Foundation Models

Representative vs. Load-bearing Layers: A Diss...

Bioinformatics
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librarian
6 views
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