Bioinformatics

Programmable design of functional RNAs through multimodal generative learning

Programmable design of functional RNAs through...

Bioinformatics
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librarian
3 views
Longitudinal treatment selection under irreversible discontinuation: History-aware prediction and trajectory-aware learning in peanut-allergy prevention

Longitudinal treatment selection under irrever...

Bioinformatics
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Yonatan Savir
2 views
Dual-graph deconvolution of enzyme fitness: an interpretable framework to identify and explain catalytic modulators

Dual-graph deconvolution of enzyme fitness: an...

Bioinformatics
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librarian
3 views
Systematic evaluation of transcript normalization methods and quantification pipelines across long-read sequencing platforms

Systematic evaluation of transcript normalizat...

Bioinformatics
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librarian
3 views
ExpertTwins: Auditable Long Horizon Scientific Panels through Grounded Expertise

ExpertTwins: Auditable Long Horizon Scientific...

Bioinformatics
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librarian
12 views
PatientPheX: A Full-Text Biomedical Corpus for Patient-Specific Phenotype Information Extraction

PatientPheX: A Full-Text Biomedical Corpus for...

Bioinformatics
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librarian
11 views
DiffRhyShiny: A Benchmarking-Informed Platform for Differential Rhythmicity Analysis with Dependence-Aware Evidence Integration

DiffRhyShiny: A Benchmarking-Informed Platform...

Bioinformatics
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librarian
11 views
DNA-LLM2Vec: Architecture-Aware Task-Conditioned Adaptation of Decoder DNA Foundation Models

DNA-LLM2Vec: Architecture-Aware Task-Condition...

Bioinformatics
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librarian
14 views
NCI-Profiler: automated protein-ligand interaction detection and visualization

NCI-Profiler: automated protein-ligand interac...

Bioinformatics
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librarian
12 views
E3 Ligase Ligandalyzer: A Structure-First, Ligand-Centric Platform for E3 Ligase Recruiter Selection

E3 Ligase Ligandalyzer: A Structure-First, Lig...

Bioinformatics
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librarian
10 views
Computational Prediction of Recombinant Expression Efficiency for Industrial Enzymes: An Integrated Co-Translational Sequence Analysis Platform

Computational Prediction of Recombinant Expres...

Bioinformatics
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librarian
11 views
BCell-Epitope-Prediction: A local, reproducible pipeline for multi-epitope vaccine design: integration and structural validation against a panel of PDB antigen-antibody complexes

BCell-Epitope-Prediction: A local, reproducibl...

Bioinformatics
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librarian
7 views
ALBIS: simulation of multi-resolution and multi-dimensional spatial transcriptomics data

ALBIS: simulation of multi-resolution and mult...

Bioinformatics
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librarian
13 views
Pan-cancer estimation of prognostic immune biomarkers from histopathology using artificial intelligence

Pan-cancer estimation of prognostic immune bio...

Bioinformatics
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William Lotter
12 views
Lack of adoption of computational gene-panel-selection tools in targeted spatial transcriptomics

Lack of adoption of computational gene-panel-s...

Bioinformatics
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Alejandro Sifrim
14 views
VirtualSkin integrates skin-cell identity with intervention-response prediction

VirtualSkin integrates skin-cell identity with...

Bioinformatics
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librarian
17 views
scGSCA: gene-set differential co-expression analysis for single-cell RNA sequencing data

scGSCA: gene-set differential co-expression an...

Bioinformatics
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Fei Ye
22 views
CLARA: Compound Library Active Learning with Reasoning Agents

CLARA: Compound Library Active Learning with R...

Bioinformatics
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Satya Pratik Srivastava
31 views
High-performance xenograft read-sorting for DNA methylation analysis

High-performance xenograft read-sorting for DN...

Bioinformatics
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librarian
24 views
Structure-Based Drug Design of Novel Inhibitors Targeting the Thiamine Biosynthesis Pathway in Bacteria

Structure-Based Drug Design of Novel Inhibitor...

Bioinformatics
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librarian
25 views
Application of Bayesian-Derived Gene Interaction Network and Subnetwork for Classification of Idiopathic Parkinson Disease with Biomarkers

Application of Bayesian-Derived Gene Interacti...

Bioinformatics
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Ruicheng Yang
27 views
genomeRxiv: a genome-based identification web server that bridges the gap between taxonomy and strain typing

genomeRxiv: a genome-based identification web ...

Bioinformatics
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librarian
22 views
Probing Physical Intuition in Large Language Models through Partner-Dependent Mutation Prediction

Probing Physical Intuition in Large Language M...

Bioinformatics
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librarian
29 views
IsoGraph resolves coordinated transcript choice and gene abundance in the aging human brain

IsoGraph resolves coordinated transcript choic...

Bioinformatics
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Kynon Benjamin
34 views
DNA methylation-based prediction of differentiation state at cell-type resolution reveals an age-associated epigenetic mesenchymal drift

DNA methylation-based prediction of differenti...

Bioinformatics
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librarian
38 views
Chain of Structures: Connecting Reasoning and Generation for Protein Design

Chain of Structures: Connecting Reasoning and ...

Bioinformatics
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librarian
41 views
WarpDemuX-custom - Multiplexed sequence-specific direct RNA sequencing

WarpDemuX-custom - Multiplexed sequence-specif...

Bioinformatics
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librarian
32 views
MeioBIOME: A snakemake workflow for the parallel analysis of meiofaunal genomes and host-associated bacteria/archaea

MeioBIOME: A snakemake workflow for the parall...

Bioinformatics
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librarian
301 views
AINN-Express: A Leakage-Aware, Sequence-Only Predictor of VHH Antibody Expression Built on the AINN-P1 Protein Foundation Model

AINN-Express: A Leakage-Aware, Sequence-Only P...

Bioinformatics
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Lurong Pan
298 views
GatorPrism: Prototype-Conditioned Routing across Coalition Graph Experts for Spatial Multi-Omics Integration

GatorPrism: Prototype-Conditioned Routing acro...

Bioinformatics
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Zhenhao Zhang
271 views
EXCAVATE-HT: A Bioinformatic Pipeline to Identify Targetable Genomic Variants for Allele-Specific Editing

EXCAVATE-HT: A Bioinformatic Pipeline to Ident...

Bioinformatics
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librarian
254 views
A new automated pipeline for whole genome shotgun sequencing analysis and hazard characterization of microbial pesticides

A new automated pipeline for whole genome shot...

Bioinformatics
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librarian
255 views
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