Bioinformatics

MiT4SL: multi-omics triplet representation learning for cancer cell line-adapted prediction of synthetic lethality

MiT4SL: multi-omics triplet representation lea...

Bioinformatics
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librarian
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Reference-guided genome assembly at scale using ultra-low-coverage high-fidelity long-reads with HiFiCCL

Reference-guided genome assembly at scale usin...

Bioinformatics
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librarian
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Task Splitting and Prompt Engineering for Cypher Query Generation in Domain-Specific Knowledge Graphs

Task Splitting and Prompt Engineering for Cyph...

Bioinformatics
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librarian
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Comparative analysis of genomic prediction approaches for multiple time-resolved traits in maize

Comparative analysis of genomic prediction app...

Bioinformatics
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librarian
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Attention-Based Solution for Synergistic Virus Combination Therapy

Attention-Based Solution for Synergistic Virus...

Bioinformatics
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Mohsen Hooshmand
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BioMiner: A Multi-modal System for Automated Mining of Protein-Ligand Bioactivity Data from Literature

BioMiner: A Multi-modal System for Automated M...

Bioinformatics
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librarian
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High-quality metagenome assembly from nanopore reads with nanoMDBG

High-quality metagenome assembly from nanopore...

Bioinformatics
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librarian
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Advancing Pediatric and Longitudinal DNA Methylation Studies with CellsPickMe, an Integrated Blood Cell Deconvolution Method

Advancing Pediatric and Longitudinal DNA Methy...

Bioinformatics
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librarian
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Assemblies of long-read metagenomes suffer from diverse errors

Assemblies of long-read metagenomes suffer fro...

Bioinformatics
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librarian
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INSIGHT: In Silico Drug Screening Platform using Interpretable Deep Learning Network

INSIGHT: In Silico Drug Screening Platform usi...

Bioinformatics
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librarian
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SieveAI: Development of an Automated extensible and customisable drug discovery pipeline and its validation

SieveAI: Development of an Automated extensibl...

Bioinformatics
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librarian
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SCassist: An AI Based Workflow Assistant for Single-Cell Analysis

SCassist: An AI Based Workflow Assistant for S...

Bioinformatics
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librarian
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Shiny-Calorie: A context-aware application for indirect calorimetry data analysis and visualization using R

Shiny-Calorie: A context-aware application for...

Bioinformatics
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librarian
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SIMIT-seq: a bead-free, scalable microfluidic platform for single cell mRNA sequencing with ultrahigh cell-indexing rate

SIMIT-seq: a bead-free, scalable microfluidic ...

Bioinformatics
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librarian
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DeltaBreed: A BrAPI-centric breeding data information system

DeltaBreed: A BrAPI-centric breeding data info...

Bioinformatics
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librarian
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An interpretable alphabet for local protein structure search based on amino acid neighborhoods

An interpretable alphabet for local protein st...

Bioinformatics
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librarian
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Dynamic Contrastive Learning with Pretrained Deep Language Model Enhances Metagenome Binning for Contigs

Dynamic Contrastive Learning with Pretrained D...

Bioinformatics
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Eric Lu Zhang
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ProtHGT: Heterogeneous Graph Transformers for Automated Protein Function Prediction Using Biological Knowledge Graphs and Language Models

ProtHGT: Heterogeneous Graph Transformers for ...

Bioinformatics
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librarian
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Label-Free Live-Cell Imaging improves Mode of Action Classification

Label-Free Live-Cell Imaging improves Mode of ...

Bioinformatics
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Edvin Forsgren
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TARRAGON: Therapeutic Target Applicability Ranking and Retrieval-Augmented Generation Over Networks

TARRAGON: Therapeutic Target Applicability Ran...

Bioinformatics
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Alexander Tropsha
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Ontology-aware DNA methylation classification with a curated atlas ofhuman tissues and cell types

Ontology-aware DNA methylation classification ...

Bioinformatics
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librarian
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Characterization of active kinase signaling pathways in astrocytes and microglia

Characterization of active kinase signaling pa...

Bioinformatics
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Robert McCullumsmith
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One-Hot News: Drug Synergy Models Take a Shortcut

One-Hot News: Drug Synergy Models Take a Shortcut

Bioinformatics
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librarian
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Discovery of Novel Trypanothione Reductase Inhibitors through Pharmacophore Modeling, virtual Screening and Molecular Dynamics Simulations. New insights for Human African Trypanosomiasis

Discovery of Novel Trypanothione Reductase Inh...

Bioinformatics
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librarian
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Development a computational framework for risk evaluation of emerging flu viruses based on genomic sequences and AI

Development a computational framework for risk...

Bioinformatics
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librarian
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Chimeric Reference Panels for Genomic Imputation

Chimeric Reference Panels for Genomic Imputation

Bioinformatics
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librarian
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rnaends: an R package targeted to study the exact RNA ends at the nucleotide resolution

rnaends: an R package targeted to study the ex...

Bioinformatics
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librarian
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A flaw in using pre-trained pLLMs in protein-protein interaction inference models

A flaw in using pre-trained pLLMs in protein-p...

Bioinformatics
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librarian
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AOP-helpFinder 3.0: from text mining to network visualization of key event relationships, and knowledge integration from multi-sources.

AOP-helpFinder 3.0: from text mining to networ...

Bioinformatics
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librarian
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Novel AI-based approach for cell type deconvolution in Visium datasets when reference scRNA-seqs include multiple minor cell types

Novel AI-based approach for cell type deconvol...

Bioinformatics
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librarian
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GAT-HiC: Efficient Reconstruction of 3D Chromosome Structure via Residual Graph Attention Neural Networks

GAT-HiC: Efficient Reconstruction of 3D Chromo...

Bioinformatics
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librarian
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ShinyCell2: An extended library for simple and sharable visualisation of spatial, peak-based and multi-omic single-cell data

ShinyCell2: An extended library for simple and...

Bioinformatics
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librarian
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