Bioinformatics

PanXpress: Gene expression quantification with a pan-transcriptomic gapped k-mer index

PanXpress: Gene expression quantification with...

Bioinformatics
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librarian
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Improving genomic language model reliability under distribution shift

Improving genomic language model reliability u...

Bioinformatics
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Gavin Hearne
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Differentiable Gene Set Enrichment Analysis for Pathway-Level Supervision in Transcriptomic Learning

Differentiable Gene Set Enrichment Analysis fo...

Bioinformatics
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librarian
4 views
Disagreement among variant effect predictors guides experimental prioritization of target proteins

Disagreement among variant effect predictors g...

Bioinformatics
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librarian
3 views
Mapping spatial cell-cell communication programs by tailoring chains of cells for transformer neural networks

Mapping spatial cell-cell communication progra...

Bioinformatics
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Niklas Brunn
4 views
RNASTOP: A Deep Learning Framework for mRNA Chemical Stability Prediction and Optimization

RNASTOP: A Deep Learning Framework for mRNA Ch...

Bioinformatics
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librarian
3 views
Computational Prediction of Plasmodium falciparum Antigen-T-cell Receptor Interactions via Molecular Docking: Implications for Malaria Vaccine Design

Computational Prediction of Plasmodium falcipa...

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Gilbert Kipkoech
5 views
RNAGAN: Train One and Get Four, Multipurpose Human RNA-Seq Analysis Tool with Enhanced Interpretability and Small Data Size Capability

RNAGAN: Train One and Get Four, Multipurpose H...

Bioinformatics
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librarian
1 view
ECHO: a nanopore sequencing-based workflow for (epi)genetic profiling of the human repeatome

ECHO: a nanopore sequencing-based workflow for...

Bioinformatics
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librarian
3 views
TriGraphQA: a triple graph learning framework for model quality assessment of protein complexes

TriGraphQA: a triple graph learning framework ...

Bioinformatics
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Kailong Zhao
4 views
Enhancing non-local interaction modeling for ab initio biomolecular calculations and simulations with ViSNet-PIMA

Enhancing non-local interaction modeling for a...

Bioinformatics
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librarian
3 views
GenBio-PathFM: A State-of-the-Art Foundation Model for Histopathology

GenBio-PathFM: A State-of-the-Art Foundation M...

Bioinformatics
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librarian
2 views
Pareto optimization of masked superstrings improves compression of pan-genome k-mer sets

Pareto optimization of masked superstrings imp...

Bioinformatics
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librarian
3 views
A Multi-Dataset Transcriptomic Analysis Unravels Core Mechanisms Involving Vitamin D Metabolism and Inflammatory Pathways for Frailty Diagnosis.

A Multi-Dataset Transcriptomic Analysis Unrave...

Bioinformatics
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Xianping Hu
4 views
An AI-Driven Decision-Support Tool for Triage of COVID-19 Patients Using Respiratory Microbiome Data

An AI-Driven Decision-Support Tool for Triage ...

Bioinformatics
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Eli Gabriel Avina-Bravo
1 view
RiboBA: a bias-aware probabilistic framework for robust ORF identification across diverse ribosome profiling protocols

RiboBA: a bias-aware probabilistic framework f...

Bioinformatics
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Ruolin Yang
1 view
ST-PARM: Pareto-Complete Inference-Time Alignment for Multi-Objective Protein Design

ST-PARM: Pareto-Complete Inference-Time Alignm...

Bioinformatics
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librarian
2 views
G-VEP: GPU-Accelerated Variant Effect Prediction for Clinical Whole-Genome Sequencing Analysis

G-VEP: GPU-Accelerated Variant Effect Predicti...

Bioinformatics
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librarian
2 views
Translating Histopathology Foundation Model Embeddings into Cellular and Molecular Features for Clinical Studies

Translating Histopathology Foundation Model Em...

Bioinformatics
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Saishi Cui
2 views
Super Bloom: Fast and precise filter for streaming k-mer queries

Super Bloom: Fast and precise filter for strea...

Bioinformatics
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Antoine Limasset
3 views
ProteinSage: From implicit learning to explicit structural constraints for efficient protein language modeling

ProteinSage: From implicit learning to explici...

Bioinformatics
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Xiaoming Zhang
1 view
A Cross-Study Multi-Organ Cell Atlas ofMacaca fascicularis Informed by Human Foundation Model Annotation: A Resource for Translational Target Assessment

A Cross-Study Multi-Organ Cell Atlas ofMacaca ...

Bioinformatics
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Terezinha de Souza
4 views
evedesign: accessible biosequence design with a unified framework

evedesign: accessible biosequence design with ...

Bioinformatics
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librarian
3 views
Semantic-Aware Energy-Efficient Operation inSmart Capsule Endoscopy

Semantic-Aware Energy-Efficient Operation inSm...

Bioinformatics
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librarian
1 view
ChiMER: Integrating chromatin architecture into splicing graphs for chimeric enhancer RNAs detection

ChiMER: Integrating chromatin architecture int...

Bioinformatics
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Yujia Xiang
3 views
StrucTTY: An Interactive, Terminal-Native Protein Structure Viewer

StrucTTY: An Interactive, Terminal-Native Prot...

Bioinformatics
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Martin Steinegger
1 view
SNMF: Ultrafast, Spatially-Aware Deconvolution for Spatial Transcriptomics

SNMF: Ultrafast, Spatially-Aware Deconvolution...

Bioinformatics
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librarian
3 views
A linguistics-based algorithm for RBP motif and context discovery

A linguistics-based algorithm for RBP motif an...

Bioinformatics
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librarian
6 views
Beyond Histology: A Unified Transcriptomic Atlas Defines Lung Cancer Biologic States and Subtypes

Beyond Histology: A Unified Transcriptomic Atl...

Bioinformatics
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librarian
3 views
De novo design of therapeutic scFvs and multi-specific engagers from sequence alone

De novo design of therapeutic scFvs and multi-...

Bioinformatics
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librarian
3 views
Outperforming the Majority-Rule Consensus Tree Using Fine-Grained Dissimilarity Measures

Outperforming the Majority-Rule Consensus Tree...

Bioinformatics
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librarian
3 views
drFrankenstein: An Automated Pipeline for the Parameterisation of Non-Canonical Amino Acids

drFrankenstein: An Automated Pipeline for the ...

Bioinformatics
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librarian
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