Bioinformatics

MorphoDeep enables fast 3D cell instance segmentation by learning cell interfaces and junctions

MorphoDeep enables fast 3D cell instance segme...

Bioinformatics
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librarian
9 views
Benchmarking Molecular Methods of Protein Engineering and Surveying Protein Search Space to Bolster Artificial Intelligence-Based Designs

Benchmarking Molecular Methods of Protein Engi...

Bioinformatics
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librarian
7 views
msallsearchpy: Universal Search Engine with Enhanced Performance for High-Flow Quantitative LC-MS Proteomics

msallsearchpy: Universal Search Engine with En...

Bioinformatics
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librarian
7 views
Pose: a pure-NumPy, chirality-aware, structural engine for building and manipulating the molecular structures of proteins, nucleic acids, and small organic molecules

Pose: a pure-NumPy, chirality-aware, structura...

Bioinformatics
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librarian
4 views
LiverHomo: An Integrated and Interactive Human Liver Single-Cell Atlas with Protein Interaction and Cell-Cell Communication Networks

LiverHomo: An Integrated and Interactive Human...

Bioinformatics
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Haiqing Zhao
4 views
PhyloScore: Improved covariation score for RNA alignments using phylogeny

PhyloScore: Improved covariation score for RNA...

Bioinformatics
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librarian
4 views
Differential sensitivity of k-mer based identification tools using closely related database sequences affects relative abundance estimation

Differential sensitivity of k-mer based identi...

Bioinformatics
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librarian
6 views
GENOAR: Global Engine for Navigating the Omnicell space via Agent-based Research

GENOAR: Global Engine for Navigating the Omnic...

Bioinformatics
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librarian
6 views
CnidoSite: A Multi-Omics Database for Cnidarians

CnidoSite: A Multi-Omics Database for Cnidarians

Bioinformatics
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Longjun Wu
5 views
A computable probability landscape for T cell receptor repertoire sampling and comparison

A computable probability landscape for T cell ...

Bioinformatics
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librarian
5 views
Going beyond labels: Semi-supervised learning for enzyme kinetic parameter prediction

Going beyond labels: Semi-supervised learning ...

Bioinformatics
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librarian
5 views
GlyEnzEA: reaction-informed enrichment of enzyme-centered glycan sets from glycomics data

GlyEnzEA: reaction-informed enrichment of enzy...

Bioinformatics
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librarian
9 views
A Multidimensional Arithmetical Ontology for High-Parameter Cytometry: Gaussian Primes and Cryptographic Hashing for Cell Population Standardization

A Multidimensional Arithmetical Ontology for H...

Bioinformatics
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librarian
7 views
Integrating Multisource Target Evidence with Machine-Learning Potency Prediction for Alzheimer's Disease Drug Discovery

Integrating Multisource Target Evidence with M...

Bioinformatics
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librarian
8 views
Unsupervised source separation and clustering of soundscape recordings predicts avian richness in hyperdiverse systems

Unsupervised source separation and clustering ...

Bioinformatics
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librarian
12 views
CytoRipple: Mapping Tissue Polarization through Subcellular Cytoskeleton Dynamics

CytoRipple: Mapping Tissue Polarization throug...

Bioinformatics
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Katie Campbell
14 views
OFC-SV: Interpreting structural variants in African and Asian cohorts with non-syndromic orofacial clefts

OFC-SV: Interpreting structural variants in Af...

Bioinformatics
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librarian
12 views
Metabolite-centric Knowledge Graph Unveils Predictive and Mechanistic Insights through Self-supervised Multimodal Learning

Metabolite-centric Knowledge Graph Unveils Pre...

Bioinformatics
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Lin Wang
11 views
scOmnom: scalable end-to-end single-cell RNA-seq analysis with auditable resolution selection

scOmnom: scalable end-to-end single-cell RNA-s...

Bioinformatics
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librarian
13 views
RDEmbed: A Sentence-Embedding Framework for Rare Disease Phenotype Representation and Phenotypic Similarity Analysis

RDEmbed: A Sentence-Embedding Framework for Ra...

Bioinformatics
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Arif Harmanci
14 views
Proteome scale drug prioritization from AlphaFold 3 interaction confidence

Proteome scale drug prioritization from AlphaF...

Bioinformatics
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Ram Samudrala
11 views
Network organization of protein binding-site landscapes across scales

Network organization of protein binding-site l...

Bioinformatics
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librarian
12 views
StainAI-Web: An Interactive Platform for Whole-Slide Microglial Morphology Analysis

StainAI-Web: An Interactive Platform for Whole...

Bioinformatics
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Tsang-Wei Tu
13 views
PATHNet: A Thermodynamic Path-Integral-Inspired Neural Network for Protein-Ligand Interaction Prediction

PATHNet: A Thermodynamic Path-Integral-Inspire...

Bioinformatics
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librarian
28 views
ELiAH2: update of the atlas of E3 ligases in human tissues by integrating tissue-specificity and docking properties of ligands for targeted protein degradation

ELiAH2: update of the atlas of E3 ligases in h...

Bioinformatics
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librarian
36 views
Mechanism-guided Discovery of Fluoroacetate Dehalogenase (FAcD) Variants for Enzymatic PFAS Defluorination

Mechanism-guided Discovery of Fluoroacetate De...

Bioinformatics
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Shaban Ahmad
29 views
MassBank Human: The annotated human metabolome

MassBank Human: The annotated human metabolome

Bioinformatics
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librarian
32 views
IsoMatch enables population-scale transcript integration and reveals reference-dependent isoform novelty

IsoMatch enables population-scale transcript i...

Bioinformatics
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librarian
27 views
MOFI reveals dynamic multi-omics coordination during cell fate progression

MOFI reveals dynamic multi-omics coordination ...

Bioinformatics
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librarian
48 views
Programmable design of functional RNAs through multimodal generative learning

Programmable design of functional RNAs through...

Bioinformatics
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librarian
28 views
Longitudinal treatment selection under irreversible discontinuation: History-aware prediction and trajectory-aware learning in peanut-allergy prevention

Longitudinal treatment selection under irrever...

Bioinformatics
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Yonatan Savir
26 views
Dual-graph deconvolution of enzyme fitness: an interpretable framework to identify and explain catalytic modulators

Dual-graph deconvolution of enzyme fitness: an...

Bioinformatics
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librarian
33 views
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