Bioinformatics

Rapid and accurate protein structure database search using inverse folding model and contrastive learning

Rapid and accurate protein structure database ...

Bioinformatics
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librarian
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Interpreting biochemical text with language models:a machine learning framework for reaction extraction and cheminformatic validation

Interpreting biochemical text with language mo...

Bioinformatics
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librarian
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Benchmarking Spectral Library and Database Search Approaches for Metaproteomics Using a Ground-Truth Microbiome Dataset

Benchmarking Spectral Library and Database Sea...

Bioinformatics
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Pratik Jagtap
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Medical Images as Biomarkers of Ageing - From Global and Local Patterns to Digital Twins

Medical Images as Biomarkers of Ageing - From ...

Bioinformatics
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Tamara Mueller
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Assessing Large Language Model Alignment Towards Radio-logical Myths and Misconceptions

Assessing Large Language Model Alignment Towar...

Bioinformatics
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Christopher West
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Multiscale Segmentation using Hierarchical Phase-contrast Tomography and Deep Learning

Multiscale Segmentation using Hierarchical Pha...

Bioinformatics
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librarian
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Triad-LMF: A Hierarchical Low-Rank Multimodal Fusion Framework for Robust Cancer Subtype Classification Using Multi-Omics Data

Triad-LMF: A Hierarchical Low-Rank Multimodal ...

Bioinformatics
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Zhuangzhuang Ren
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Fast, flexible gene cluster family delineation with IGUA

Fast, flexible gene cluster family delineation...

Bioinformatics
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librarian
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BEstimate: a computational tool for the design and interpretation of CRISPR base editing experiments

BEstimate: a computational tool for the design...

Bioinformatics
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librarian
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Chromatin interaction-based annotation of distal cis-regulatory elements reveals highly dynamic promoter-enhancer interactions in lymphocyte development

Chromatin interaction-based annotation of dist...

Bioinformatics
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librarian
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difFUBAR: Scalable Bayesian comparison of adaptive evolution

difFUBAR: Scalable Bayesian comparison of adap...

Bioinformatics
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librarian
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Immune Spatial Organization Predicts Metastasis Risk in Aggressive Localized Prostate Cancer

Immune Spatial Organization Predicts Metastasi...

Bioinformatics
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librarian
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CPP2Vec: a Representation Learning Approach for Cell-Penetrating Peptides Prediction

CPP2Vec: a Representation Learning Approach fo...

Bioinformatics
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librarian
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SWANS: A highly configurable analysis pipeline for single-cell and single-nuclei RNA-sequencing data

SWANS: A highly configurable analysis pipeline...

Bioinformatics
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librarian
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InstaNovo-P: A de novo peptide sequencing model for phosphoproteomics

InstaNovo-P: A de novo peptide sequencing mode...

Bioinformatics
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librarian
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Amira: gene-space de Bruijn graphs to improve the detection of AMR genes from bacterial long reads

Amira: gene-space de Bruijn graphs to improve ...

Bioinformatics
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Daniel Anderson
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Snekmer Learn/Apply: A kmer-based vector similarity approach to proteinclassification suitable for metagenomic datasets

Snekmer Learn/Apply: A kmer-based vector simil...

Bioinformatics
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librarian
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eSPred: Explainable scRNA-seq Prediction via Customized Foundation Models and Pathway-Aware Fine-tuning

eSPred: Explainable scRNA-seq Prediction via C...

Bioinformatics
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librarian
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Macroscopic Analyses of RNA-Seq Data to Reveal Chromatin Modifications in Aging and Disease

Macroscopic Analyses of RNA-Seq Data to Reveal...

Bioinformatics
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Achal Mahajan
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DNA methylation networks during pig fetal development: a joint fused ridge estimation approach

DNA methylation networks during pig fetal deve...

Bioinformatics
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Karolina Wachala
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Aggregating multimodal cancer data across unaligned embedding spaces maintains tumor of origin signal

Aggregating multimodal cancer data across unal...

Bioinformatics
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librarian
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fMRIPrep Lifespan: Extending A Robust Pipeline for Functional MRI Preprocessing to Developmental Neuroimaging

fMRIPrep Lifespan: Extending A Robust Pipeline...

Bioinformatics
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librarian
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Integrative analysis across metagenomic taxonomic classifiers: A case study of the gut microbiome in aging and longevity

Integrative analysis across metagenomic taxono...

Bioinformatics
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librarian
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Estimation of substitution and indel rates via k-mer statistics

Estimation of substitution and indel rates via...

Bioinformatics
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librarian
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Case Study of Using AI as Co-Pilot in Biotech Research: Functional Network Analysis of Invasive Cancer

Case Study of Using AI as Co-Pilot in Biotech ...

Bioinformatics
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Anton Sinitskiy
2 views
A Systems Biology Approach to Unveil Shared Therapeutic Targets and Pathological Pathways Across Major Human Cancers

A Systems Biology Approach to Unveil Shared Th...

Bioinformatics
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librarian
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Hi-Compass resolves cell-type chromatin interactions by single-cell and spatial ATAC-seq data across biological scales

Hi-Compass resolves cell-type chromatin intera...

Bioinformatics
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librarian
2 views
Genome complexity, not ploidy, dictates long-read variant-calling accuracy

Genome complexity, not ploidy, dictates long-r...

Bioinformatics
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librarian
2 views
Visual analytics framework for survival analysis and biomarker discovery

Visual analytics framework for survival analys...

Bioinformatics
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Blaz Zupan
1 view
ProtFun: A Protein Function Prediction Model Using Graph Attention Networks with a Protein Large Language Model

ProtFun: A Protein Function Prediction Model U...

Bioinformatics
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librarian
2 views
A novel bioinformatics approach reveals key transcription factors regulating type 1 diabetes-associated transcriptomes

A novel bioinformatics approach reveals key tr...

Bioinformatics
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Afzal Sheikh
2 views
Fast barcode calling based on k-mer distances

Fast barcode calling based on k-mer distances

Bioinformatics
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Riko Corwin Uphoff
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