Bioinformatics

CANCAN: high-resolution copy number and mutation heterogeneity analysis of DNA sequence data for clinical applications

CANCAN: high-resolution copy number and mutati...

Bioinformatics
Avatar
librarian
7 views
ToxCastLite: A portable semantic evidence graph linking in vitro bioactivity, in vivo toxicity, and exposure-use context

ToxCastLite: A portable semantic evidence grap...

Bioinformatics
Avatar
librarian
9 views
PocketBagger: Generalizable pocket druggability prediction via positive-unlabeled learning

PocketBagger: Generalizable pocket druggabilit...

Bioinformatics
Avatar
librarian
8 views
Multi-Scale Tri-Modal Histology Dataset Integrating Tumor Morphology, Immune Patterns, and Clinical Outcomes

Multi-Scale Tri-Modal Histology Dataset Integr...

Bioinformatics
Avatar
librarian
8 views
HESTIA: Scalable Multimodal Integration of Histology and High-Resolution Spatial Transcriptomics for Robust Spatial Domain Identification

HESTIA: Scalable Multimodal Integration of His...

Bioinformatics
Avatar
librarian
8 views
Interpretable Predictive Modeling for Medical Data Using Boolean Rule-aware Regression

Interpretable Predictive Modeling for Medical ...

Bioinformatics
Avatar
librarian
15 views
Elab2ARC: A Browser-Based Workspace for Converting Free-Text Protocols into rich FAIR digital objects

Elab2ARC: A Browser-Based Workspace for Conver...

Bioinformatics
Avatar
Sabrina Zander
15 views
A unified benchmark of synthetic data generation for clinical transcriptomic cancer cohorts

A unified benchmark of synthetic data generati...

Bioinformatics
Avatar
Christophe BATTAIL
29 views
Identifying Treatment Related Signatures In Glioblastoma Using KaleidoCell

Identifying Treatment Related Signatures In Gl...

Bioinformatics
Avatar
Jean Radig
27 views
Biological foundation models illuminate annotation blind spots in evolutionarily divergent genomes

Biological foundation models illuminate annota...

Bioinformatics
Avatar
librarian
27 views
TransXplorer: An automated translational discovery platform for RNA-seq data

TransXplorer: An automated translational disco...

Bioinformatics
Avatar
Varinder Madhav Verma
25 views
The human gut virome is a non-redundant and clinically informative component of the microbiome

The human gut virome is a non-redundant and cl...

Bioinformatics
Avatar
librarian
18 views
A modular Bayesian framework for inferring transmission networks from polyclonal infections, with application to Plasmodium falciparum

A modular Bayesian framework for inferring tra...

Bioinformatics
Avatar
librarian
20 views
Pan-Viral Conformational Landscapes of Frameshifting Elements Reveal Length-Dependent Plasticity and Antisense-Driven Structural Reprogramming

Pan-Viral Conformational Landscapes of Framesh...

Bioinformatics
Avatar
librarian
20 views
Deep learning models for chemical perturbation prediction do not yet utilise drug molecular features

Deep learning models for chemical perturbation...

Bioinformatics
Avatar
librarian
21 views
Metabolic Self-Organization: Emergence of Autonomous Agency in a Metabolically Constrained LLMs

Metabolic Self-Organization: Emergence of Auto...

Bioinformatics
Avatar
librarian
17 views
Physics-Informed Neural Networks for Parameter Recovery in the Repressilator Oscillatory Model

Physics-Informed Neural Networks for Parameter...

Bioinformatics
Avatar
Jordi Villà-Freixa
19 views
Exploring the Mechanism of Na⁺/K⁺-ATPase (NKA) and 20-HETE Ligand Interactions by in-silico modeling

Exploring the Mechanism of Na⁺/K⁺-ATPase (NKA)...

Bioinformatics
Avatar
librarian
16 views
TDP-43 regulates chromatin looping and gene transcription through binding and stabilizing DNA G-quadruplex structures

TDP-43 regulates chromatin looping and gene tr...

Bioinformatics
Avatar
librarian
21 views
Machine learning-based Personalized Dietary Recommendations to Achieve Desired Gut Microbial Compositions

Machine learning-based Personalized Dietary Re...

Bioinformatics
Avatar
librarian
19 views
Improving Variant Effect Prediction by Steering Sparse Mechanistic Features in Protein Language Models

Improving Variant Effect Prediction by Steerin...

Bioinformatics
Avatar
Yonghong He
20 views
DeSpotX: Identifiability-Based Decontamination for Spatial Transcriptomics

DeSpotX: Identifiability-Based Decontamination...

Bioinformatics
Avatar
librarian
25 views
Integrating trajectory inference and gene regulatory network analysis to resolve transcriptional programs of T cell state transitions in the tumor microenvironment

Integrating trajectory inference and gene regu...

Bioinformatics
Avatar
librarian
27 views
LOCALE: Local-Alignment Embeddings for Noise-Robust DNA Search at SRA Scale

LOCALE: Local-Alignment Embeddings for Noise-R...

Bioinformatics
Avatar
librarian
23 views
Evaluation of MeaSeq: comprehensive analysis and reporting of measles virus whole genome sequences.

Evaluation of MeaSeq: comprehensive analysis a...

Bioinformatics
Avatar
librarian
23 views
A multi-omic, spatial, and whole-slide image dataset of lung neuroendocrine tumours from the lungNENomics cohort

A multi-omic, spatial, and whole-slide image d...

Bioinformatics
Avatar
Nicolas Alcala
24 views
BRIDGE-GRN: Role-Aware Bi-Tower Graph Learning with Cross-View Contrast for Directed Gene Regulatory Network Inference

BRIDGE-GRN: Role-Aware Bi-Tower Graph Learning...

Bioinformatics
Avatar
librarian
24 views
Structure tokens sharpen the feature vocabulary of protein language models

Structure tokens sharpen the feature vocabular...

Bioinformatics
Avatar
librarian
24 views
Benchmarking Boltz-2 for Screening of Therapeutic Antibody-Antigen Interactions

Benchmarking Boltz-2 for Screening of Therapeu...

Bioinformatics
Avatar
Alexandra Fieux-Castagnet
25 views
Classic machine learning on top of multiple position weight matrices improves genomic prediction of transcription factor binding sites

Classic machine learning on top of multiple po...

Bioinformatics
Avatar
Dmitry Penzar
27 views
OmniGene-4: A Unified Bio-Language MoE Model with Router-Level Interpretability

OmniGene-4: A Unified Bio-Language MoE Model w...

Bioinformatics
Avatar
Liang Wang
26 views
Predicting Biological Age and Clinical Biomarkers from DNA Methylation Profiles of Cheek Mucosa

Predicting Biological Age and Clinical Biomark...

Bioinformatics
Avatar
librarian
27 views
Load more